Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015877926.1_cds_XP_016436608.1_32449
CDS Infomation

[gene=LOC107762739] [db_xref=GeneID:107762739] [protein=probable pectate lyase 13] [protein_id=XP_016436608.1] [location=complement(join(15636..15882,17940..18145,19222..19413,20235..20940,21561..21691))] [gbkey=CDS]
Sequence

ATGCTTTCTGCTATTTGCATTCTCTTATTCTGTTTCTTAATCTCATTTTTCCCACTAATT
ACAACTTCCCTTAATCTCACCCTCCCCTATCAACACCCTTACCCTGAAGCTGTGGTTCAA
GAATTACAAAGGAGGGTGAATGAGTCCATATCAAGAAGACAACTGTTAGACACAACCATA
AATGCACAATGTCAAACAGGGAACCCAATAGACGATTGCTGGCGCTGCGACCCAAACTGG
GTCAGCAATCGTCAACGTCTAGCAGATTGCGCCATAGGCTTCGGTCAAGGCGCAATCGGA
GGAAGAAATGGTAAGATTTATGTTGTCACCGATTCCTCCGACAGAGACACTGCCAACCCA
ACGCCGGGGACTCTCCGGCACGCGGTAATCCAAGACGAACCGCTCTGGATAATTTTCTCG
TCCGACATGTTCATAAAATTAAAACATGAACTTATCGTAAATAGTTACAAAACAATCGAC
GGTCGTGGTACAAAAGTACACATTACGGGCAATGGGTGTATAACGTTACAGTATATAAGT
AACGTTATTATACACAATGTGCATATTTACAATTGTCGCCCTTCGGGAAATACTAATATA
CGCTCGACCCCGACTCATGTTGGGCATAGAGGTAGATCGGACGGTGATGGAATTTCTATA
TTTGGTTCGCGGAATATTTGGATTGATCATTGTGCATTGTCGCATTGTACCGACGGCTTA
ATTGATGCTATCATGGGGTCCACTGCGATTACTATATCTAACAACTATTTCACTCACCAT
GATGAAGTTATGCTCTTGGGACATGATGATAGATATTTGCCCGACTCCGGAATGCAGGTG
ACAATAGCGTTCAATCATTTTGGAGTAGGATTAGTACAAAGAATGCCAAGGTGTAGAAGA
GGGTATATCCATGTAGTGAACAATGATTTTACAGAATGGCAAATGTATGCAATTGGAGGA
AGTGCTAATCCTACTATTAATAGTCAGGGCAATCGCTATATGGCGCCAGTTGATCCAAAT
GCAAAGGAGGTGACAAAGCGCGTGGAAACAGACGAGGGTGAGTGGAGTGACTGGAACTGG
AGAAGTGATGGGGACGTAATGGTAAATGGAGCATTTTTCGTGCCATCAGGTGAAGGGCTG
AGCAACCAATACGCGAAGGCCTCGAGCGTGGAGCCCAAATCCGCTGTTCTTATTGATCAA
CTCACCCTCAACGCCGGTGTTTTTGGTGCCCCGAGGGATAATAGTATTAGCATATCATAC
GGAGGAGGGACCACCACCGGAGCTAGCGGGAGTGGCGGTGCCGGGTCCACCGGCGGCAAC
GATAGTGATTTCTTTGGAATGATATTTGGGAGCGGCGCAGCAGCAAAATTATCACCATCT
ACAACCACTACTATTTTATTGTCTCATTTAATTATTTTAGTTTTGTACATTACCACCAAC
CATGGTGGGCAATTATCATTACAATTATTACACTTACTATAG

Peptide Sequence

PEP ID

XP_016436608.1
PEP Infomation

PREDICTED: probable pectate lyase 13 [Nicotiana tabacum]
Sequence

MLSAICILLFCFLISFFPLITTSLNLTLPYQHPYPEAVVQELQRRVNESISRRQLLDTTI
NAQCQTGNPIDDCWRCDPNWVSNRQRLADCAIGFGQGAIGGRNGKIYVVTDSSDRDTANP
TPGTLRHAVIQDEPLWIIFSSDMFIKLKHELIVNSYKTIDGRGTKVHITGNGCITLQYIS
NVIIHNVHIYNCRPSGNTNIRSTPTHVGHRGRSDGDGISIFGSRNIWIDHCALSHCTDGL
IDAIMGSTAITISNNYFTHHDEVMLLGHDDRYLPDSGMQVTIAFNHFGVGLVQRMPRCRR
GYIHVVNNDFTEWQMYAIGGSANPTINSQGNRYMAPVDPNAKEVTKRVETDEGEWSDWNW
RSDGDVMVNGAFFVPSGEGLSNQYAKASSVEPKSAVLIDQLTLNAGVFGAPRDNSISISY
GGGTTTGASGSGGAGSTGGNDSDFFGMIFGSGAAAKLSPSTTTTILLSHLIILVLYITTN
HGGQLSLQLLHLL

Transcript Sequence

Gene sequence data has not been registered.